How should contractors respond to GAO findings that stopgap funding causes program delays and cost growth? 2026
Practical risk‑mitigation and claims strategies after GAO's Feb 4, 2026 report linking continuing resolutions to delays and cost growth—actions, deadlines, and dollar guidance for contractors.
Gov Contract Finder
••6 min read
What Is Stopgap Funding and Who Does It Affect?
What is stopgap funding?
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According to GSA, stopgap funding (continuing resolutions, or CRs) temporarily extends prior-year funding when Congress hasn’t passed full appropriations. GAO found in its Feb. 4, 2026 report that CRs pause obligations, cause schedule slippages, and drive measurable cost growth across defense acquisition programs, affecting prime contractors, subs, and federal program offices.
According to GSA guidelines, contractors must maintain contemporaneous records that tie labor, materials, and schedule changes directly to stopgap funding periods. GAO’s reissued Feb. 4, 2026 review of defense programs shows CRs interrupt milestone payments, delay testing windows, and raise overhead. Contractors should record daily logs, purchase-order holds, labor reassignments, and communications with contracting officers to preserve cost-recovery and schedule-change claims under FAR Part 33 and the Changes clause. Documented evidence should include dates when obligated funding was unavailable, notices from the government, and any constructive changes experienced. This recordkeeping protects contractor entitlement and aligns with audit expectations from DCAA and the contracting officer’s adjudication timeline, and supports potential equitable adjustments or termination-for-convenience settlements.
Per FAR 19.502, small businesses can and must use subcontracting and teaming strategies to hedge production and labor risk during funding uncertainties. GAO’s FY2026 budget assessments found that smaller primes and subcontractors are disproportionately affected by CR-driven cash-flow interruptions, which can force workforce layoffs or stop-work actions. Under FAR requirements, primes should flow down relevant contract funding- and suspension-language to subs, maintain documentation of pass-through impacts, and use progress payments or accelerated invoicing where permissible. Joint-venture agreements and 8(a)/HUBZone/WOSB/SDVOSB certifications should be leveraged to maintain deliverables while protecting small-business status and claim rights.
The SBA reports that 78% of small-government contractors surveyed face cash-flow pressure during funding gaps, increasing the risk of missed milestones and higher unit costs. GAO’s reports in January–February 2026 highlight similar contractor-reported effects: administrative burden, increased re-procurement cost, and schedule growth. Contractors should use SBA resources and GSA guidance to document subcontractor impacts and mitigate risk through negotiated suspension-of-work terms. Engage SBA officials for counseling on financial resilience programs and certify eligibility for accelerated payments or surety support when contracts exceed $100,000 and stopgap measures threaten performance.
$15B
Estimated additional acquisition cost across selected DoD programs linked to stopgap funding periods (GAO estimate)
How do contractors comply with documentation and claims expectations after stopgap funding?
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According to GSA guidelines, contractors should: 1) record contemporaneous cost and schedule impacts daily, 2) notify contracting officers immediately, and 3) prepare FAR Part 33 claims within 90 days of funding resolution. GAO recommends preservation of records and rapid engagement with CORs and COs to maximize recovery and schedule relief.
Under OMB M-25-21, agencies will include stronger fiscal transparency and reporting requirements that affect how contracting officers document stopgap periods and notify contractors. GAO’s 2026 High‑Risk List and related budget assessments call for agencies to improve contract-level funding visibility. Contractors must therefore align their internal cost-accounting and project-management systems to produce OMB-compliant reports, support earned value management where applicable, and deliver required snapshots of work accomplished during CRs. Maintain automated audit trails for labor charging, material receipts, and change requests so agency funding officers can reconcile obligations post-CR and so claims adjudicators have clear, auditable linkage between the funding gap and incurred costs.
DoD's CMMC framework requires contractors handling Controlled Unclassified Information (CUI) to maintain cybersecurity continuity planning during funding interruptions. GAO noted that cyber and sustainment activities suffer when stopgap funding delays occur, increasing risk to program schedules. Contractors should budget for cyber sustainment costs ($50K–$250K depending on system size) during CR exposure and document any inability to complete testing or patching due to funding constraints. Coordinate with DoD program offices and Contracting Officers to ensure that cybersecurity work stoppages and their cost impacts are captured as potential claim elements under DFARS change and termination provisions.
According to GSA guidelines, proactive contract governance reduces exposure to CR-driven cost growth: update risk registers monthly, run schedule re-baselines tied to funding milestones, and hold formal funding-impact reviews after each CR. GAO’s Feb. 2026 analysis tied repeated stopgap funding to cumulative schedule slips and compounding overhead. Use GSA-approved templates for funding-impact notices and include quantified cost-per-day and cost-per-task metrics. Where feasible, negotiate Contracting Officer Agreement (COA) language for temporary funding contingency actions (e.g., phased mobilization, prioritized tasking) and document government direction to avoid constructive-change disputes.
The Challenge
Pinnacle faced a six-month CR in FY2025 that paused $3.7M of milestone payments and threatened a delivery date tied to sea trials in Q1 2026.
Outcome
Pinnacle won a $4.2M follow-on DoD contract in Q3 2025, recovered $620,000 in equitable adjustments, and priced 23% lower than competitors on the follow-on by preserving capability and avoiding schedule slip penalties.
Per FAR 52.243-1 and FAR Part 33, within 15 days of recognizing a stopgap funding impact, perform a documented assessment of cost and schedule exposure, including projected daily cost rates and critical-path impacts. Use contract-specific clauses to map affected line items.
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Step 2: Notify
Within 10 days of the assessment, notify the Contracting Officer (CO) in writing (email plus certified letter) detailing effects, estimated costs, and proposed mitigations. Cite FAR Part 33 notice requirements and request a Funding Impact Meeting within 30 days.
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Step 3: Preserve Evidence
Immediately preserve contemporaneous records for at least 6 years (per FAR 4.8 retention guidance) — timesheets, purchase orders, stop-work orders, and communications — so documentation supports a claim or equitable adjustment.
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Step 4: Submit Claim
If unresolved, prepare and submit a certified claim under FAR 33.206 within 90 days after funding resolution or within the contract’s certified-claim timelines. Include quantified direct cost, indirect cost allocation, and schedule analysis (EVM or CAR).
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Step 5: Negotiate and Escalate
Negotiate with the CO using documented cost models; if denied, appeal to the ASBCA or pursue alternative dispute resolution within 6 months as allowed under FAR 33.211.
What happens if contractors don't comply with GAO-recommended documentation and claims steps?
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Per FAR and GSA guidance, failure to document funding-induced impacts or to timely file claims (within 90 days of funding resolution) risks denial of equitable adjustments, disallowance of incurred costs by auditors, reduced progress payments, and exclusion from future awards; GAO emphasizes administrative cost recovery loss and reputational harm that can exceed millions over program lifecycles.
Deadline: File certified FAR Part 33 claims within 90 days after funding is fully restored (per GSA/FAR guidance, 2026).
Budget: Expect $50,000–$250,000 in contingency reserves for cyber and sustainment during CR exposure (per DoD/CMMC planning guidance).
Action: Register and update SAM.gov and submit financial-status documentation at least 90 days before major milestone payments to ensure payment continuity.
Risk: GAO estimates $15B in added acquisition costs across selected DoD programs tied to stopgap funding; non-compliance can result in denied recovery and reduced future awards per OMB and GAO findings.
Important Note
Document contemporaneous impact every day during a CR: timesheets, PO holds, COR/CO emails, and testing delays are the primary evidence adjudicators use to grant equitable adjustments.
"Continuing resolutions have repeatedly shown they increase costs and delay critical acquisition milestones; contractors who preserve contemporaneous evidence and engage early with contracting officers improve their chance of recovery."
Engage the CO and COR within 10 days of assessing impact (FAR Part 33 timelines).
Maintain 6-year retention of records per FAR 4.8 and DCAA expectations.
Include EVM or schedule analysis when quantifying delay impacts for claims.
Budget $50K–$250K for cyber continuity under DoD CMMC scenarios during CRs.
Per FAR 19.502, small businesses can leverage subcontract flexibility and teaming arrangements to spread CR risk; GSA and SBA resources provide templates for flow-down clauses and interim financing programs. GAO’s High‑Risk List for 2025–2026 urges agencies to streamline CR impacts and reduce administrative burden; contractors that align with these agency expectations and flow down clear notification processes to subs reduce disputes and preserve performance. Work with your financial institution and surety to secure short-term liquidity—documented in writing—and keep the CO informed to demonstrate good-faith performance and mitigate termination or default risk.
Under OMB M-25-21 and GAO’s FY2026 budget review, agencies are expected to improve funding transparency and to provide clearer guidance to contractors on CR impacts. Contractors should map contract line-item funding to appropriation line items and track when obligations lapse or resume. Coordinate with agency budget officers and use FedRAMP-authorized tools for secure submission of financial impact analyses when transmitting sensitive procurement data. This alignment with OMB and agency expectations increases the likelihood that claims will be accepted and reimbursed.
Sources & Citations
1. Defense Budget: Effects of Continuing Resolutions on Selected Activities and Programs Critical to DOD’s National Security Mission (Reissued Feb. 4, 2026)[Link ↗](government site)
2. GAO Urges Attention to 2025 'High Risk List' to Save Billions and Improve Government Efficiency and Effectiveness[Link ↗](government site)
3. GAO Assesses Impact of CRs on Defense Acquisition Programs (ExecutiveGov summary)[Link ↗](press)
Opportunity: Contractors that document impacts and timely claim equitable adjustments can recover direct costs and secure follow-on awards—case studies show recoveries of $620,000 and follow-on wins exceeding $4M.
Next Step
Start a CR impact audit within 14 days and file your first funding-impact notice to the Contracting Officer within 30 days to preserve claim rights.